EPIC Test Compendium Alpha
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FISH Oncology

Test Catalog Information

Test Catalog Synonyms

Myeloproliferative Disorder (MPD) Probes: PDGRA/FIP1L1 fusion, CHIC2 del(4q12), PDGFRB, FGFR1 (8p11.2) cep 8

Myelodysplastic Disorder (MDS) Probes: -5/ deletion 5q, -7/ deletion 7q, Trisomy 8, Deletion 20q, TP53 (deletion 17p)

Chronic Myeloid Leukemia (CML) Probes: BCR/ABL t(9;22)

Acute Myeloid Leukemia (AML) Probes: -5/ deletion 5q, -7/deletion 7q, RUNX1T1/RUNX1 t(8;21), KMT2A/MLL (11q23), PML/RARA t(15;17), CBFB inv(16)/t(16;16), TP53 (deletion 17p)

Chronic Lymphocytic Leukemia (CLL) Probes: MYB (deletion 6q), ATM (deletion 11q), CCND1/IGH t(11;14), CEP 12 (Trisomy 12), D13S319/LAMP1 (deletion 13q), TP53 (deletion 17p)

Acute Lymphocytic Leukemia (ALL) Probes: MYC t(8q24), BCR/ABL t(9;22), KMT2A/MLL (11q23), ETV6/RUNX1 t(12;21)

Multiple Myeloma Panel Probes: CCND1/IGH t(11;14), RB1 (deletion 13q), IGH/MAF t(14;16), TP53 (deletion 17p)

Lymphoma Panel Probes: BCL6 Break Apart t(3q27), CCND1/IGH t(11;14), MYC Break Apart t(8q24), BIRC3/MALT1 t(11;18), IGH Break Apart (14q32), IGH/BCL2 t(14;18), MYC/IGH t(8;14)

S/P Sex Mismatched Bone Marrow transplant Probes: X,Y

Liposarcoma probes: MDM2/CEP 12 

EPIC Synonyms Chronic Myeloid Leukemia (CML)
Myeloproliferative Disorder (MPD)
Myelodysplastic Disorder (MDS)
Cerner Primary MnemonicHLX FISH Oncology CASE
EPIC Display NameFISH Oncology
Allscripts (AEHR) Order Name

FISH Oncology

Sunrise Clinical Manager (SCM) Order Name

Not Orderable

EPIC Inpatient Orderable Yes
EPIC Outpatient Orderable Yes
Cerner Results FISH KARYO
Target Probe
Fish Indication
Fish Results
Control Probe
FISH INTER
Clinical Info

The following panels can be performed on peripheral blood and bone marrow specimens: 1. Myeloproliferative Disorder (MPD) Probes:  PDGRA/FIP1L1 fusion  CHIC2 del(4q12) PDGFRB FGFR1 (8p11.2) cep 8 2. Myelodysplastic Disorder (MDS) Probes: -5/ deletion 5q -7/ deletion 7q Trisomy 8 Deletion 20q  TP53 (deletion 17p) 3. Chronic Myeloid Leukemia (CML) Probes:  BCR/ABL t(9;22) 4. Acute Myeloid Leukemia (AML) Probes:  -5/ deletion 5q -7/deletion 7q  RUNX1T1/RUNX1 t(8;21) KMT2A/MLL (11q23)  PML/RARA t(15;17) CBFB inv(16)/t(16;16)  TP53 (deletion 17p) 5. Acute Lymphocytic Leukemia (ALL) Probes:  MYC t(8q24) BCR/ABL t(9;22) KMT2A/MLL (11q23) ETV6/RUNX1 t(12;21) 6. Multiple Myeloma Panel Probes:  CCND1/IGH t(11;14) RB1 (deletion 13q) IGH/MAF t(14;16) TP53 (deletion 17p) 7. S/P Sex Mismatched Bone Marrow transplant Probes:  X,Y  The following panels can be performed on peripheral blood, bone marrow, and lymph node specimens: 8. Chronic Lymphocytic Leukemia (CLL) Probes:  MYB (deletion 6q) ATM (deletion 11q) CCND1/IGH t(11;14) CEP 12 (Trisomy 12) D13S319/LAMP1 (deletion 13q) TP53 (deletion 17p) The following panel can be performed on peripheral blood, bone marrow, lymph node, and Touch prep specimens: 9. Lymphoma Panel Probes:  BCL6 Break Apart t(3q27),  CCND1/IGH t(11;14),  MYC Break Apart t(8q24),  BIRC3/MALT1 t(11;18),  IGH Break Apart (14q32),  IGH/BCL2 t(14;18),  MYC/IGH t(8;14) The following test can be performed on FFPE slides only: 10. Liposarcoma probes:  MDM2/CEP 12  PEDIATRIC PANELS: SINGLE PROBES:  CML-BCR::ABL t(9;22)  APL-PML::RARA t(15;17)  S/P Sex Mismatched BM Transplant (X/Y Probes)  Pediatric B-ALL Panel   BCR::ABL t(9;22)    CEP4/CEP10/CEP17    KMT2A (11q23)    ETV6::RUNX1 t(12;21)    Pediatric T-ALL Panel   BCR::ABL t(9;22)    KMT2A/MLL (11q23)    High Risk Pediatric ALL Panel   ABL1    ABL2    PDGFRB    AML Panel   -5/deletion 5q   -7/deletion 7q   RUNX1T1::RUNX1 t(8;21)   KMT2A (11q23)    PML::RARA t(15;17)    CBFB inv(16)/t(16;16)    MDS Panel    -5/deletion 5q   -7/deletion 7q   Trisomy 8   Deletion 20q 

Specimen Type

Blood, Bone Marrow, Tissue, Other

Container

Green Top Tube

Collection Instructions

An indication must be provided with each specimen. The laboratory will not delay or reject testing if this information is not provided, but appropriate testing and interpretation may be compromised. Peripheral Blood: Container/Tube:  Green-top (sodium heparin) tube(s) Specimen:  5-10 mL of sodium heparin whole blood. Collection Instructions:  Invert several times to mix blood. Other anticoagulants are not recommended and are harmful to the viability of the cells. Label vial with patient’s name and date of birth. Forward promptly. Specimen cannot be frozen.      Bone Marrow: Container/Tube:  Green-top (sodium heparin) tube(s) or Sterile heparinized syringe Specimen: 5 ml preferred. Minimum 2 ml with sufficient spicules Collection Instructions:  Invert several times to mix. Other anticoagulants are not recommended and are harmful to the viability of the cells. Label vial with patient’s name and date of birth. Forward promptly. Specimen cannot be frozen.     Lymph Node: Container/Tube:  Sterile specimen container with sterile saline or RPMI 1640 Specimen: At least 0.5cm3 piece separated aseptically  Tumor tissue: Container/Tube:  Sterile specimen container with sterile saline or RPMI 1640 Specimen: At least 0.5cm3 piece separated aseptically  BM/PB smear for FISH analysis: Prepare six smears on a clean positively charged glass slide. 1 smear per probe required. Immediately air dry or send it fresh to the laboratory ASAP. Send to the laboratory ASAP at room temperature. Tissue block/Slides: 4 unstained slides of FFPE tissue section specimen 4-5 micron thick with two unique identifiers, block ID and cut number clearly labeled on the positively charged slides are required. An additional Hematoxylin and Eosin (H&E) slide must be submitted along with the sample clearly marked by a pathologist to denote the area of interest for the FISH study.    Send to the laboratory ASAP at room temperature. 

Transport Instructions

Transport Temperature: Send to the laboratory ASAP at room temperature 20-25°C. If there is a delay in transportation, store the sample in a refrigerator at 4°C / DO NOT FREEZE

Specimen Stability

48 hours room temperature If specimen cannot be sent promptly, refrigerate and send ASAP DO NOT FREEZE

Methodology

Fluorescence In Situ Hybridization (FISH)

Days Performed

Monday through Saturday

Performing Laboratory

Northwell Health Laboratories

CPT

88271 - DNA probe, each 88275 - interphase in situ hybridization 88291 - interpretation and report

PDM

5160520

Desired Epic Build FISH Oncology

Cerner Primary Mnemonic: HLX FISH Oncology CASE
PDM 5160520
Informatics - WorkgroupCytogenetics/FISH
Synonyms *Chronic Myeloid Leukemia (CML)
Myeloproliferative Disorder (MPD)
Myelodysplastic Disorder (MDS)
Display Name *FISH Oncology
Order Entry Specimen Sources *
Order Entry Specimen Types
Blood
Bone Marrow
CSF
Lymph Node
Other
Tissue
Specimen Navigator Specimen Types
Specimen Navigator Specimen Sources
Specimen Navigator Short Name
Ordering info (EPIC SmartText)The following panels can be performed on peripheral blood and bone marrow specimens: 1. Myeloproliferative Disorder (MPD) Probes:  PDGRA/FIP1L1 fusion  CHIC2 del(4q12) PDGFRB FGFR1 (8p11.2) cep 8 2. Myelodysplastic Disorder (MDS) Probes: -5/ deletion 5q -7/ deletion 7q Trisomy 8 Deletion 20q  TP53 (deletion 17p) 3. Chronic Myeloid Leukemia (CML) Probes:  BCR/ABL t(9;22) 4. Acute Myeloid Leukemia (AML) Probes:  -5/ deletion 5q -7/deletion 7q  RUNX1T1/RUNX1 t(8;21) KMT2A/MLL (11q23)  PML/RARA t(15;17) CBFB inv(16)/t(16;16)  TP53 (deletion 17p) 5. Acute Lymphocytic Leukemia (ALL) Probes:  MYC t(8q24) BCR/ABL t(9;22) KMT2A/MLL (11q23) ETV6/RUNX1 t(12;21) 6. Multiple Myeloma Panel Probes:  CCND1/IGH t(11;14) RB1 (deletion 13q) IGH/MAF t(14;16) TP53 (deletion 17p) 7. S/P Sex Mismatched Bone Marrow transplant Probes:  X,Y  The following panels can be performed on peripheral blood, bone marrow, and lymph node specimens: 8. Chronic Lymphocytic Leukemia (CLL) Probes:  MYB (deletion 6q) ATM (deletion 11q) CCND1/IGH t(11;14) CEP 12 (Trisomy 12) D13S319/LAMP1 (deletion 13q) TP53 (deletion 17p) The following panel can be performed on peripheral blood, bone marrow, lymph node, and Touch prep specimens: 9. Lymphoma Panel Probes:  BCL6 Break Apart t(3q27),  CCND1/IGH t(11;14),  MYC Break Apart t(8q24),  BIRC3/MALT1 t(11;18),  IGH Break Apart (14q32),  IGH/BCL2 t(14;18),  MYC/IGH t(8;14) The following test can be performed on FFPE slides only: 10. Liposarcoma probes:  MDM2/CEP 12  PEDIATRIC PANELS: SINGLE PROBES:  CML-BCR::ABL t(9;22)  APL-PML::RARA t(15;17)  S/P Sex Mismatched BM Transplant (X/Y Probes)  Pediatric B-ALL Panel   BCR::ABL t(9;22)    CEP4/CEP10/CEP17    KMT2A (11q23)    ETV6::RUNX1 t(12;21)    Pediatric T-ALL Panel   BCR::ABL t(9;22)    KMT2A/MLL (11q23)    High Risk Pediatric ALL Panel   ABL1    ABL2    PDGFRB    AML Panel   -5/deletion 5q   -7/deletion 7q   RUNX1T1::RUNX1 t(8;21)   KMT2A (11q23)    PML::RARA t(15;17)    CBFB inv(16)/t(16;16)    MDS Panel    -5/deletion 5q   -7/deletion 7q   Trisomy 8   Deletion 20q 
IP Orderable Yes
OP Orderable Yes
AOEs *

AP AOEs
Special History Yes
Build Commentsplease pull the last 10 results
Filter *genetics
Procedure Category Change
Cerner Results

Result DescResult displayResult PDM
FISH KARYO FISH KARYO 5160527
TAR PROBE Target Probe 5160522
FH IND Fish Indication 5160021
FH RESULTS Fish Results 5160524
CONTROL Control Probe 5160523
FISH INTER FISH INTER 5160530

Actual Epic build

Procedure Id 115153
Pdm 5160520
Order Display Name FISH Oncology
Procedure Name FISH (ONCOLOGY)
Procedure Master Number LAB11406
Short Procedure Name FISH (ONCOLOGY)
Category Code 15.0
Category Code Record Name LAB CYTOGENETICS ORDERABLES
Synonyms CHRONIC MYELOID LEUKEMIA (CML) MYELOPROLIFERATIVE DISORDER (MPD) MYELODYSPLASTIC DISORDER (MDS)
Clinically Active Yes
Orderable Yes
Performable
Filter Genomics Generic Genomics Procedure
Reference Link Url https://labs.northwell.edu/epic/test/115153
Ordering Instructions
Default Specimen Type
Specimen Type Pick List Bone Marrow Blood Other Lymph Node Tissue Cerebrospinal Fluid
Specimen Type List
Op Specimen Type List
Specimen Source Pick List Abdominal Wall Alveoli Amniotic Sac Ankle, Left Ankle, Right Anus Arm, Left Arm, Right Autopsy Axilla, Left Axilla, Right Back, Lower Back, Upper Brain, Amygdala Brain, Basal Ganglia Brain, Cerebellum Brain, Cerebral Cortex Brain, Hypothalamus Brain, Medulla Brain, Pons Breast, Left Breast, Left Central Breast, Right Breast, Right Central Buttock, Left Buttock, Right Cervix Cheek Chest, Left Chest, Right Chin Diaphragm Ear, Left Ear, Right Elbow, Left Elbow, Right Esophagus Eye, Left Eye, Right Fallopian Tube, Left Fallopian Tube, Right Fetus Foot, Left Foot, Right Forearm, Left Forearm, Right Forehead Foreskin Gallbladder Hand, Digit Left Hand, Digit Right Hand, Left Hand, Right Hip, Left Hip, Right Kidney, Left Kidney, Right Knee, Left Knee, Right Appendix Colon, Cecum Large Intestine, Left/Descending Colon Large Intestine, Rectum Ascend Colon Sigmoid Colon Transverse Colon Larynx Leg, Left Leg, Right Lip, Lower Lip, Upper Liver Lung, Left Lower Lobe Lung, Left Upper Lobe Lung, Right Lower Lobe Lung, Right Middle Lobe Lung, Right Upper Lobe Mediastinum Meninges/Dura Naris, Left Naris, Right Nasal/Nasopharynx Neck Oral Cavity Oropharynx Ostomy Pouch Other Ovary, Left Ovary, Right Pancreas Penis Pericardium Placenta Prostate Retroperitoneum Scalp Scrotum Shoulder, Left Shoulder, Right Small Intestine, Duodenum Small Intestine, Ileum Small Intestine, Jejunum Spinal Cord Spine, Cervical Spine, Lumbar Sacral Thoracic Spleen Sympathetic Ganglion Testicular Appendage Testis, Left Testis, Right Thigh, Left Thigh, Right Thymus Thyroid Toe, Left Toe, Right Tongue Trachea Blood, Cord Ureter, Left Ureter, Right Urethra Bladder Vagina Vas Deferens, Left Vas Deferens, Right Vulva Wrist, Left Wrist, Right Blood, Arterial Blood, Capillary Blood, Central Line Blood, Venous CSF Reservoir Lumbar Puncture VP Shunt Aspirate Uterus Nose Throat Heart Stomach
Specimen Source Default - Male
Specimen Source Default - Female
Specimen Source List
Op Specimen Source List
Ip Lab Test Components For Report HLXFISH:10
Op Lab Test Components For Report HLXFISH:10
Order Questions ["3048500055", "3045300170", "3045300171", "3045300173"]
Order Questions Record Name NH IP PANEL YN NH IP HOME COLLECT DATE NH IP HOME COLLECT DAYS NH IP HOME COLLECT MEDICALLY NECESSARY
Inpatient Order Questions ["3048500055", "3048500000"]
Inpatient Order Questions Record Name NH IP PANEL YN
Order Specific Question Override Yes
Inpatient Question Override
Location Restrict List Ip
Location Restrict List Ip Record Name
Location Restrict List Include Ip
Location Restrict List Op
Location Restrict List Op Record Name
Location Restrict List Includes Op
Edp Amb Order Specific Questions Record Name NH IP PATIENT COMPLETED CONSENT
Edp Ip Order Specific Questions Record Name NH IP PATIENT COMPLETED CONSENT
Edp Ip Specimen Source
Edp Op Specimen Source
Edp Ip Specimen Type
Edp Op Specimen Type
Derived Edp Ip Buttons S
Derived Edp Ip Buttons T
Derived Edp Op Buttons S
Derived Edp Op Buttons T
Ip Orderable 1
Op Orderable 1
EPIC OP AOEs

Question IDQuestion NameQuestionResponse TypeResponse ListRequire Response
3045300170 NH IP HOME COLLECT DATE Start Date Date Yes
3045300171 NH IP HOME COLLECT DAYS Days Custom List Monday
Tuesday
Wednesday
Thursday
Friday
Saturday
Sunday
Yes
3045300173 NH IP HOME COLLECT MEDICALLY NECESSARY Medically Necessary? Yes/No Yes
3048500055 NH IP PANEL YN Panel: Yes/No Yes
EPIC IP AOEs

Question IDQuestion NameQuestionResponse TypeResponse ListRequire Response
3048500000 NH IP PATIENT COMPLETED CONSENT Patient completed consent? Yes/No Yes
3048500055 NH IP PANEL YN Panel: Yes/No Yes
EPIC Components (results)